PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.2120s0040.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 419aa    MW: 45569 Da    PI: 7.1865
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.2120s0040.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.6e-1753102255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +gr++AeIrdp     +  r +lg+f+taeeAa a++ a++ ++g
  SapurV1A.2120s0040.1.p  53 RYRGVRRRP-WGRYAAEIRDPQ----SkERRWLGTFDTAEEAACAYDYAARVMRG 102
                             59*******.**********93....35999*******************99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541716.54E-2153110IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-2953109IPR001471AP2/ERF domain
PROSITE profilePS5103222.0153110IPR001471AP2/ERF domain
CDDcd000185.26E-2853109No hitNo description
SMARTSM003805.1E-3153116IPR001471AP2/ERF domain
PfamPF008472.0E-1053102IPR001471AP2/ERF domain
PRINTSPR003672.5E-95465IPR001471AP2/ERF domain
PRINTSPR003672.5E-97692IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 419 aa     Download sequence    Send to blast
MEEALRRLNG MPNHVPESNP PETIIVDLQK KSAPATTSKR SLKESGGNSG NMRYRGVRRR  60
PWGRYAAEIR DPQSKERRWL GTFDTAEEAA CAYDYAARVM RGIKARTNFV YPETYSATTD  120
SQNLLPPFTF SKSSHHQPSR QCNTAPTANW SSLGHSFVGD FSAGWSAPQR SSSGSAANTS  180
SLNMLFLRDF VNSSSGSSSQ NHAQPLYHDH FPCINGSSYS APSTYSGGSL SNPSSNSSSA  240
GLYNFSGNLA NSTVTSLPHM EFNQNYTPVA LNRPASKAED LGFFPQEPSG SGLLQEIIQG  300
FLPKHSTETT DFSKSSGESM VAPSAEIIFG GQSLDGSRST KKHFVENDHR GAAYLDHEGI  360
KPSAQAGGYY RTGVSCHEQA PYNNEMSLNL PVGQDSFLED IFQYPDLMSA FAARFNNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-1754109359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002314597.10.0AP2 domain-containing transcription factor family protein
TrEMBLB9HTT10.0B9HTT1_POPTR; AP2 domain-containing transcription factor family protein
STRINGPOPTR_0010s05670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41003256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24590.11e-14DORNROSCHEN-like